NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000390

Scaffold Ga0307507_10000390


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000390 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91011
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029000Metagenome189Y
F050927Metagenome144Y
F078050Metagenome / Metatranscriptome116Y
F082146Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000039013F078050N/AMIGMVDIKEQLDKEKQLEDLRDSIRARRKDLDKITVQLTH
Ga0307507_1000039015F050927N/AVPEYPATRKEGIAHFIYKVIPLLSIEADKETVCDIIKQYMLKVSNAYARHLLYLYL
Ga0307507_100003906F082146N/AMFYVSLLQPLKDNPITYKVPLLPSIIINNSNSSYFINLINNMR
Ga0307507_100003907F029000N/AMRYIIPIDLINAILVAKYFVKYIFKLYRLPNLIISNHRSQFILDF
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