NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000394

Scaffold Ga0307507_10000394


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000394 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90681
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F000630Metagenome971Y
F004663Metagenome428Y
F032490Metagenome179Y
F094694Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100003942F004663GGAMGVSEKSRLGSINKEGLLKNKSPKGDLRGVITELLRVVSLTGGELVFLLPSLDKPC
Ga0307507_1000039420F032490N/AMLNLKNNPMPILNLQRQLILGGFNLLALALTSKGKPSSLKDYNNLNKVDINNVLSFINYTTIDK
Ga0307507_1000039421F000247AGGVYTYIIYITLNYKRTPHIEVAYTNYLTSSLNISISKTPVPSSSVLFTYLFIDRKPYYNSGLSLNKSIDPTSTGL
Ga0307507_1000039424F000247AGGVQTNIIHIILSYKRTPYTEVAYTNYLTSSLNIFIDITLVPSSSIPFTHLSMGGKLYYNSSLFLNESIDLASTGL
Ga0307507_1000039425F094694AGCAGGVVSILKVGLVYIVCKVFSKHIHLLTLTYIVTIINFIGKSKY
Ga0307507_100003947F000630GGAGMGVKDIEAVLGKRNLSHSIVNAIGGKYLRALRRPNKGRKYNSNTLKNRNNRTKRLALLDGCPSR
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