NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000400

Scaffold Ga0307507_10000400


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000400 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90263
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F000630Metagenome971Y
F002793Metagenome529Y
F015182Metagenome256Y
F066630Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000040022F015182N/AMTSGCVTEAISDFFKKIFLVFSIVLSKDSSIFLKFNIELVK
Ga0307507_1000040024F002793N/AMDIIPLVDNLEILGIFKDKDKEEGDSITDALSIIL
Ga0307507_1000040025F000247AGGVQTNAIYIVLSYKHTPCIEVARTNYLASSLNIFIDMTLVSSSGVPFAHLSIGGKPYYNSGLSLNESIDLTSTGL
Ga0307507_100004003F000630GGAGMEVKGTEADLGKGNPSYSIGNAIGGKYLRAPRGPNKGRKYNSNTLKDRNNRTKRLALLGGYPSR
Ga0307507_100004004F066630N/AMLLAASIENYNTLLLTQKGLKAATRWLISQNMLDQFRVAKEIAIESKGASNRRPLITLQE
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Institute for Fundamental Biomedical Research
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