NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000407

Scaffold Ga0307507_10000407


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000407 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89404
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029000Metagenome189Y
F056201Metagenome137Y
F064278Metagenome128Y
F096933Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000040711F064278N/AMPLANAYCNTLINPATVTCFNHKKDSYFTLSYPELKNIGNIKEIKEEEISNKLGKEVP
Ga0307507_1000040712F056201N/AMAPSRSIKPRGLNTLTRKIPYGRMPRQITVVGVPREYLSMVCRGKETN
Ga0307507_1000040714F029000N/AMRYIIPMDLINIILVAEYFIKHVFKLYRLSNLIISNYRNQFILDFW
Ga0307507_1000040716F064278N/ALPNPPRTIPLTNAYCNTLINPTTVTYFNYGKDGYFTISYPELKDIGNIKGIEEEETSDKLGKEEP
Ga0307507_100004073F096933N/AMTSGSITKAIGDLFKEIFLVFSVVLGEDSSVFLELNIELVK
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