NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000483

Scaffold Ga0307507_10000483


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000483 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83907
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (58.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F004663Metagenome428Y
F006298Metagenome376Y
F007022Metagenome359Y
F035578Metagenome171Y
F064533Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000048320F002220N/AMESLFRERMHPLKSNSVVKLSLSFGFTISFTFTSASSLRAENWSLPKIIILLVCMLIIPNRVPIVVIRK
Ga0307507_1000048322F006298N/AMERRLVIKNSNGLYTIYLTILSKVLVGRVVLNFYIYKKLFSLINLTLKIFFAFILNQEALEVGYSNFLVFNISCALAKLIICLLLSIKGVSS
Ga0307507_1000048327F007022N/AMVTCFNYRKDSYFALSYLEPKDIGNIKEIEKKEISNKLGKEEP
Ga0307507_1000048330F064533N/AMGSPIHPLYPRIGISLGSSLKGAFKKLASFIAHYISIKAKAFALKLAKVEVKT
Ga0307507_1000048336F004663AGGAMGVLKESRSGNINKEGLPKNKSPKGDLRGAIAKLLRVISLTGGELVLLLPSLDKPY
Ga0307507_1000048339F035578N/AMIITRLIEYIVAGVEDTAKGIINVNYKAIVEVLIEVYLKTINRRNAIFVKSQIAS
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