NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000540

Scaffold Ga0307507_10000540


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000540 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80566
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F014479Metagenome / Metatranscriptome262Y
F041034Metagenome160Y
F056201Metagenome137Y
F056213Metagenome137Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000054017F096350GGCGGVCFFSAKAFLILAIVIAKIVYLGFLSSYTNRVALIM
Ga0307507_1000054018F056213N/AVDFSVRRSILLYHLLITFAQALRAPSRSTLIREVFSLGLRDLIRLLISAELF
Ga0307507_1000054019F000247AGGVYTYIIRVALSYRHTLYTEVVRTNCLASSLNTFVDKTPVPSFSVPFTHPFVDGKLYYNSGLSLNKSIDPTSTSL
Ga0307507_100005402F056201N/AMAPSRSTRLRRLKTLTRKIPYGKMPKWIIVVGVPREHLSIACRGKEIN
Ga0307507_1000054022F014479GAGGLLSSSVTTVVEGVCVFLSGNYRYARVFELLVHLGIRAHSAVLPRGLYCHNLLLSEGPSCFSATAFYKVSVEFPFRLSRDFKGGIVGVNKI
Ga0307507_1000054024F041034AGGMDVSGSLRLVEFNRILRVVRLGRLLRYIVDISRNFKLVDPSGFFRF

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