NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000568

Scaffold Ga0307507_10000568


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000568 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79272
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002555Metagenome548Y
F007022Metagenome359Y
F064296Metagenome128Y
F064575Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000056816F000630GAGMGVKGIEANLGKRNLSYSIVNAIGGKYLRALRRPNKGRKYNSNTFKNRDNRTKRLALLGRYSSRQPKMQI
Ga0307507_1000056819F002555GGAMLGIFKDKDKKEGDSITDALSMMLQLLREETAEAS
Ga0307507_1000056823F064575N/AMILTNLRKPTMAPKASLSKRSASTREEHEVQLGLEIKDNDDVTGVYKQICALIAN
Ga0307507_1000056824F007022N/AMVMCFNYRKDGYFTTSCLELKDISDIKEIEEEETPNKLGKEEP
Ga0307507_1000056825F064296AGGMYWKDNKVFITSLYKIDRIINKKEEGPVEETDKELVKRLFPIYLLDHRDAFLKVALDMLPPY
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