NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000589

Scaffold Ga0307507_10000589


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000589 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78348
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F007022Metagenome359Y
F021494Metagenome218Y
F064278Metagenome128Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000058913F007022N/AVVIYFNYGKDSYFTLFYLKLKDIGNIKEIEKEEIFNKLGKEEP
Ga0307507_1000058916F021494GAGMSCVPTSLSKSKSVIASGSSPILTSWLYAPYKPAACVIFAVLNLILNCPGLKLTVAVYGGLPTRRPLPCVPCIPCVPVWFSNITRRRF
Ga0307507_100005893F088008GGAGMLSHLIIKGLFRRNVIALNSLLIKIASFTVCDRANNLASMLNVVTIPCLFAL
Ga0307507_100005895F002220AGGVHLLKSNSVLKLSFSFSFAIRFAFTNLSSLRAKNWLSPKIIILLVYMPMILNRVPIVIIRKYRLNIEVVIKSFSL
Ga0307507_100005896F064278N/ALLYIIPLANAYYNTLINPTIVTYFNCRKDSYFTISYLKLKDIGNIKEIKKEEISNKLEKEEP
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Institute for Fundamental Biomedical Research
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