NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000611

Scaffold Ga0307507_10000611


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000611 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77363
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (64.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F024756Metagenome204Y
F027375Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100006111F027375AGGTGGVLILYYIFNKRQNKDQNTLLNMVPLLDTIPLSVPNRSYRSKNRSTSSTAIIVIKTAKYPKNFIYLLIITRIALATSPVLILVGGKPIIKSIINSNMGPYRIESTNNSPYRQCLGIYTLWHVSHLNT
Ga0307507_100006112F024756GGAMPICSIVYCIIVGESASTNGLKRLVPRLESAMVAGEIEISDLYKTFPDLFL
Ga0307507_100006116F000247N/AMVGRYRQSRLVQTNVIYIVLSYKHTLCMEVARTNYLISSLNIFIDTTLVPSSGVLFTYLSADKKPYYNSGLFLNESIDLTSTGL
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