NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000672

Scaffold Ga0307507_10000672


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000672 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74360
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007022Metagenome359Y
F032886Metagenome178Y
F035639Metagenome171Y
F064575Metagenome128Y
F081096Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000067210F081096N/AMHIYRGGYRGNIGQLDKDLTVRDISQLIKRGDISLVSRRGESRLSSIGPSISIAPLL
Ga0307507_1000067218F035639GGAMVNGLIDNNRILKDKINGIGVVKVKLLSVKQFLEEKLKLKGFLI
Ga0307507_1000067220F032886N/AMELEYLLINSDKEEKEANWGRLNLNNVIEVETETTIERGLVMGIITLLDTASITSKDKRSNI
Ga0307507_1000067221F064575AGGAMTPKASLFKRPAFTQEEHKIQLGLEIKDNNNITNIYKQIRALAAN
Ga0307507_1000067222F007022N/AMVICFNYRKDSYFAMSYLELKDIGNIKEIEEEETSNKLRKKEP
Ga0307507_100006725F007022N/AMYFNYKKDSYFTMSYLELRDIGNIKKIEKEEISNKLEKEEL
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