NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000708

Scaffold Ga0307507_10000708


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000708 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73270
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (29.41%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F006298Metagenome376Y
F019457Metagenome229Y
F019458Metagenome229Y
F035578Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000070815F019458N/AMKLDIFNKLKESFIFSFNNRYSANVFYGIMPDTRAVGVSIVGEP
Ga0307507_1000070816F006298N/AMERRLVIKNSNSLYTIYLTILSKVLVGRVVLNFYIYKKLFGLVNLTLKIFFAFILNQEALEVGYSNLIISNVLCALAKLIIYLLLSIKRVPS
Ga0307507_1000070817F035578N/AMVAGVGDIVEGIINIDHKVTVEVLMEVYLKTINRRNAIFVRSQIAS
Ga0307507_1000070819F000630GGAMLERQIGVKGIEVDLGKGNLSHSIGNTIGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLGRYPSR
Ga0307507_1000070826F019457GGAMQTNNIIILGDDQFLALKEDKLVKVNLIAKLKKKLNLITLLLFNRCILSLNEDSIALRQK
Ga0307507_100007086F035578GGAVAGVGDTAEGIINIDYKVTVEILMEVYLKIINRRNAMFIRSQIAG
Ga0307507_100007087F019458N/AMLYAITKLDIFNKPKKSSIFSFNNRYSANVFYGIMLDTRAVGVSTVGEP
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