NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000718

Scaffold Ga0307507_10000718


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000718 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72795
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024756Metagenome204Y
F027375Metagenome194Y
F032105Metagenome180Y
F050242Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000071816F032105GGAGVDVIITAKVPQLKPVRIMDILKGNIPSPAIMADKILLKTIKVIVSNCLVYIPKVARLFFKPFLLPLVEPY
Ga0307507_1000071824F027375N/AMVLLLDTIPFSVLNKSYCFKNRSASSATVIVVIIVKYPKNFVYLLTITRIALATSPIFILVGGKPIIKSIVNSNIGPCGIGSTNNLLYRRCLDIYTLWHVLYLNT
Ga0307507_1000071825F024756GGAMPIYSIAHYTMVGESTSTNGLKRLMPHLGSIMAVGETEISNLHKTFPDLLL
Ga0307507_100007185F050242GGAVRLCVPTSAAKDVGYFTLSSREVVCINFKLILQLKLLIVKYRVSSVYKQ
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