NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000758

Scaffold Ga0307507_10000758


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000758 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71119
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (34.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F017572Metagenome240Y
F027375Metagenome194Y
F039539Metagenome163Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000075810F017572N/AMLEPAHGDIKPPVYKADTYKGQEEDKWQVLKIISYKDVDDET
Ga0307507_1000075816F039539AGGAVDLLEDDTPIELNKLLTLDFKKFIKLKKGLTNKELYKLLPKRYHDFINICL
Ga0307507_1000075823F027375N/AMVPLSDTIPLSVLNRSHRFKNRSASSATVIVIKTVKYPKNFVYLLIITRIALATSLVLILVGGKPIIKSIINSDIGPYRIGSTDNLLYRQYLGIYTLWHVLYLNT
Ga0307507_100007586F002555AGTAGMLGIFKNEDKEEGDSITDSLSTVLQLLGEELEEASWLI
Ga0307507_100007587F017572N/AMLEPAYGDIKPLVYKVDMYRGQEEDKWQVLKIISYKDVDNET
Ga0307507_100007588F056201N/AMAPSRSTELRGPNTLTRKIPYGRMPKRIIVVELFREYLSIAHRGKEIN
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