NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000779

Scaffold Ga0307507_10000779


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000779 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70265
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (44.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005943Metagenome385Y
F015182Metagenome256Y
F032886Metagenome178Y
F056213Metagenome137Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100007792F015182GGCGGVTKAISNFFKKIFLVFSIVLGKGSGIFLEFNIKLIK
Ga0307507_1000077924F096350N/AMGTFIAGLVYFFSAKAFLILAIVIVKIVYSGFLASYANGVALII
Ga0307507_1000077926F056213N/AVDFGIRRSILLYHLLITFAQALRAPGRSTPIREVFSLGLRDLIRLLTSAELF
Ga0307507_1000077929F032886N/AMELEYLLINSNKGKKGTNWEYLNLSNAIEAETKTTIERGLVTGIITPLDTVFITL
Ga0307507_100007794F005943AGGMLWDGGNGYRTYVFEESTRRCAIDRKGRGRKEVIYLRVADVSCTQGVCESTGLSYGGPYGGVP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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