NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000796

Scaffold Ga0307507_10000796


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000796 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69772
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (67.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F035578Metagenome171Y
F037003Metagenome168Y
F038017Metagenome166Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100007961F035578GGAMVAGVGDIVEGIINVNYKAIMEVLMEVYLKIINKRNTMFVRS
Ga0307507_1000079610F038017GGAGVVRLTRYRFKLKDKDKLRVNLKNVAHYILSWIAYMDNTCNIYRAPKDKNRKYLVRIY
Ga0307507_1000079613F002555GGAVDDLEILGIFKDEDKEEGDSITDALSTMLRLLREELAEAS
Ga0307507_100007965F037003AGGAMVEGEIKEYAIKDETTEETVEVKRNYLSVLAMYYSRTTLSTERARKDTL
Ga0307507_100007966F088008GAGVLLHLIIKGLFRRNVITLNSLLVKIASFTVYNRANNSASVLDVITIPCLFAL

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