NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000807

Scaffold Ga0307507_10000807


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000807 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69353
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006298Metagenome376Y
F017572Metagenome240Y
F093556Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000080712F017572N/AMLEPAHGDIKPPVYKADIYRGQEKDKWQVLKIISYKDIDNKTWYKVK
Ga0307507_1000080719F093556N/AVQRPPAINPLPAKLGSNILDGEFNNNILDTLVPNLIPNLNKLELLGREVQHQ
Ga0307507_100008074F006298N/AMEHRLVIKNSNGLYTIYLTILSKVLVGRVVFNFHIYKELFGLINLTLKVFYAFILNQEALKVGYSNLIISNISCTLVKLVIYLLLLIKRVPS
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