Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000816 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69006
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (66.67%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

69006

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (66.67%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F005943	Metagenome	385	Y
F006298	Metagenome	376	Y
F009949	Metagenome	310	Y
F024756	Metagenome	204	Y
F027375	Metagenome	194	Y
F032535	Metagenome	179	Y
F037003	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100008161	F005943	AGG	MSRDGGNGYKAYVFEESTRRYAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYRGPCGGVP
Ga0307507_1000081610	F002220	AGG	MHLLKSNGVIKLSFSFGFAIRFTFTSSSSLRAKNWSSPKIIILLVCMPIILNRVPVVVIRKQGLNIKVVIKSFSL
Ga0307507_1000081612	F006298	N/A	MEHRLVIKNSNGLCAIYLTILSKVLVRRVVLNFYIYKELFNLINLTLKVFYAFILNQEALEVGHSDFIISNVSYTLTELVICLFSLIKGVSS
Ga0307507_1000081614	F009949	AGG	MGGKYLRALRGPNKGRKYNSNTLKNRNNRTKRLALLGRCLSR
Ga0307507_1000081617	F032535	N/A	MARKPIGAIAIRWHKILGYIGPNAIAQLPKYVISVELTEFETNERAPLKIECKVYLLAKHMQQIS
Ga0307507_100008162	F002220	GAG	MLITSIFLPWPFWRKVIEFLFRERMHPLKSNSVVKLSFSFSFAIRFAFTSFSSLRAENWLSSKIIILLVYMLIILNGVPIVVIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000081620	F037003	GAG	MEETRKERMVKEEIKEYAIKDKTTKETVEVKRNYLSILAMHYSRTTPLTEKAYKDIL
Ga0307507_100008168	F024756	GGA	MSIYSMVYYITAGESAGTNSLKRLISRLGFIMVVGKIEASNLYKTFLDLLL
Ga0307507_100008169	F027375	N/A	VLNKSYRFKNRSASSAAVIVIIIAKYPKNFIYLLIITRIALATSLVFILVGGKPIIKSIISSNIGPYKIGSTNNLLYRQYLNIYTLWHVLYLNT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000816

Overview

Ecosystem & Geography

Associated Families

Sequences