NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000825

Scaffold Ga0307507_10000825


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000825 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68684
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003725Metagenome471Y
F008074Metagenome339Y
F035578Metagenome171Y
F065308Metagenome127Y
F074608Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000082510F008074GAGGLEYWLATKIYNVNNNIEVKVIVIFKGKLKSARGFLVYLAVMAVLYKMLNHLSLNFVTYLLKNLK
Ga0307507_1000082511F035578GGAMVARVGDIAEGIININYKAIIEVLVEVYLKTINKRNTIFIRSQIAS
Ga0307507_1000082517F008074GAGLEYWLAAEIYNVNNDIEVEVVVIFKGELKLARGLLVYLVVMVVLYKMFNCLSLDFITCLLKNPK
Ga0307507_1000082518F074608N/AMERRLVIKDSNGLCAIYLTILGKVLVGRVVLNFYIYKELFGLVNLTLKIFFAFILN
Ga0307507_100008256F003725GGAGMNLYIDLKETAKLVQEQIKRYYNAKRFKGPDLKEGDKV
Ga0307507_100008257F065308AGGAGVEQGLQELSDEKTDSLLTERETTPNTLVVNPLGSPLGNSFFGNPSLLILPNPFSSDTSIPFP
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