NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000839

Scaffold Ga0307507_10000839


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000839 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68197
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (29.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027375Metagenome194Y
F029000Metagenome189Y
F066630Metagenome126Y
F082146Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000083918F029000GGAMNIMVVVNHLIKMRYMIPIDLINVILVAKYFVKHVFKLHRLPNLIISNYGS
Ga0307507_100008392F029000N/AMRYIIPMNLINAILVAEYFIKYVFKLYRLSNLIIFNYKSQFVLDF
Ga0307507_1000083924F027375N/AMVPLLNIIPLSVLNKSYRSKNRSASSTAVIVIIIVKYPKNFVYLLMITKIALATFPILILVGSKPIIKSIINSNCHGTLLQGPL
Ga0307507_100008393F066630N/AMLLAASTENYNILLLTQKGLKAATRWLISQNMLDQFRVIKEIVIEGKGASNRRPLITLQE
Ga0307507_100008395F082146N/AMFYVSLLQPLKDNPITYKVPPLPFIIVNNGNSSYFINLINNI
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