NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000842

Scaffold Ga0307507_10000842


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000842 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68144
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (43.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F026200Metagenome198Y
F038927Metagenome / Metatranscriptome164Y
F082146Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100008421F082146GAGMFYVSLLQPLKDEPITREVLPPPPVIVDNSNSSYFIDLINDIR
Ga0307507_1000084215F026200N/AMLVYLFIIYIKDLFKFLLVCDVAIIVSFSYPFYNITTFLFINTCLTRDLFRELEADF
Ga0307507_1000084225F038927AGTAGMESNKWKAIKEIIANGLTKALPKQRFQNFVNLVRMVDIKERLDKEKQLEDLKEKVRARRKDLDKIMVQLTY
Ga0307507_1000084228F002555GGAMLGIFKDEDKEEGDSIIDALSTMLXLLREESAEAITGLA
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