NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000867

Scaffold Ga0307507_10000867


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000867 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67071
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F007022Metagenome359Y
F050242Metagenome145Y
F064575Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000086754F007022N/AMVTCFNCGKDSYFTTSCPELKDMGNIKEIEEEETSNKLGKEEL
Ga0307507_1000086755F064575AGGAMAPKASLSKRPASTREEYEIQLGLEIKDNNNIIGIYKQIYALATN
Ga0307507_1000086756F050242GGAMRLYVPTSTAENVGYFSLGSREVVRINFKLILQLKLLIVKYRVSSVYKQ
Ga0307507_1000086760F002555GGAVDDLEILGIFKDKDKEEGDSVMDALSTILQLLREELAEAS
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