NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000881

Scaffold Ga0307507_10000881


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000881 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66788
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002793Metagenome529Y
F014479Metagenome / Metatranscriptome262Y
F041034Metagenome160Y
F050242Metagenome145Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000088114F014479N/AVGLEGFRLLFSSVVTVVEGVYIFLSVASDYRCARVFELLVHLGIRARSAVLPRGLYYYNLSPLEGPSCLSATAFYKVFVEFLFRLL
Ga0307507_100008812F041034GAGVWPSIISRFLVDVSRNLILVEFSGILRLVELGRLFKYRVDISRNFRLVDSSGFFRFWVRA
Ga0307507_100008813F096350AGGMAGLVYFFSAKAFLILAIVTVKIVYSGFLASYANRVAPIM
Ga0307507_100008817F050242GGAMRLYVPTGTAEDVGHFGLSSREVVRINFKLVLQLKLPIIKYRVSSVHKQRGVYNLRGPQQ
Ga0307507_100008819F002793N/AMDITPLVNNLEILGIFKDEDKEEGDGVTDALIIML
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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