NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000882

Scaffold Ga0307507_10000882


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000882 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66742
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (65.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016255Metagenome248Y
F025697Metagenome200Y
F032535Metagenome179Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000088234F025697N/ALSGGGGEADSRVVDGRVAHGKDTGSGKAGSKKVSGFLADFALFLLLLSTKPYKERFGIYFLKLH
Ga0307507_1000088236F016255N/AMLSFTPLNTPDSYLIKELNMHSVNNKIIKDASKDALSFTNPLESLPRE
Ga0307507_1000088237F056201N/AMAPSRSIGLRGLNTLTRKIPYRRVPRWIIVVGVPREHLSIAYRGKEIN
Ga0307507_100008827F032535N/AMARKPVGAIAIKWYKILGHVGPTAIKQLPKHVIGVELTKLTTKRAPLKIEYKTCLLAKYTQQIS
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