NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000915

Scaffold Ga0307507_10000915


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000915 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65613
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F002793Metagenome529Y
F032886Metagenome178Y
F044237Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000091512F002555AGTAGMLGIFKDKDKEEGDGVMDSLSIILQLLGEELEKAS
Ga0307507_1000091513F044237N/AMYKLNLPAKIKIYPIQHIAILELAHRGIKPLVYKADIYRGQEENK
Ga0307507_100009154F032886N/AMELEYLLINSNKEEKGTNWEYLNLNNAIEAETKTTIERGLATGIITPLDTASITL
Ga0307507_100009155F002793N/AMDITPLVDNLEILGIFKDKDKEEGDSITDALSIIL
Ga0307507_100009158F002555AGTAGMLGIFKDKDKEKGDSVTDALSTILRLLGEEMVEAS
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