NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000923

Scaffold Ga0307507_10000923


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000923 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65432
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F003725Metagenome471Y
F007022Metagenome359Y
F026200Metagenome198Y
F066630Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100009231F007022N/AMVICFNCGKDSYFTISYSELKDIGNIKEIKEEEISNKLGKEEP
Ga0307507_1000092312F003725N/AMEILINLYTDLTETAKLVQQRIKRYYNAKRSKGPDLKEGDKVWLLYKNFKR
Ga0307507_1000092315F066630N/AMLLAAGIENYNTLLLTQKGLKAATRWLISQNMLDQFWVAKEIAIEGKGASNRRPLITL
Ga0307507_1000092316F000630N/ALVGPTLERQIGVKGIEVDLGKGNLSHSIGNTIGGKYLRALRGPNKGGKYNSNTLKDRNNRTKRLASLGRYPSG
Ga0307507_100009235F026200N/AMLVYLFIMYIKDLFKFLLVYNVAIIISFGYPFCNIITFLFINVCLIRDLFRELKADF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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