NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000944

Scaffold Ga0307507_10000944


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000944 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64840
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015182Metagenome256Y
F021494Metagenome218Y
F032105Metagenome180Y
F054477Metagenome139Y
F091119Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000094412F021494GAGMSYVPTSASISKSIIVSSSSPNLTSQLYALYRLAINIIFTALSLILNYPSLKLTIDIHRGLPTGRPLPYIPYNPYIPCNPYVPYNPYIPI
Ga0307507_1000094418F015182GGCGGVTEAISDFFKEIFLVFSIISGEGSGIFLEFNIELVK
Ga0307507_1000094419F054477N/AVSISLGVKASANKSNSPGIDWRRRLSIGIGLFFGFDIVASKEYCLTIMGSLEV
Ga0307507_1000094420F091119AGGMSRDGGSGYKTYVFEESTRRCAIDRKGRGRKEVIYLRVADVSCTRG
Ga0307507_100009448F032105GAGVIIIAKAPQPKPVRMMDILKGNVLSPAIIADKILLKTIKVIVSNYLVYIPEVTRLFFKPLPLSLAEPY
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