NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000954

Scaffold Ga0307507_10000954


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000954 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64422
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005943Metagenome385Y
F015182Metagenome256Y
F032490Metagenome179Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000095413F005943AGGVSWDGGNGYRAYVFEESTRRCAINRKGRGRKEVIYLRVANVSCTRGVRESTGLSYRGPYSGVP
Ga0307507_1000095414F015182GGCGGVTKVISNFFKKIFLVFSIILGKDSGIFLEFNIELIK
Ga0307507_1000095415F032490N/AMSNLKNNPISILNPQRQLILGGFNLLALALTPKGKPSGLKDYNNLNKVDINNVLSFIDYITTDK
Ga0307507_1000095416F005943AGGMSRDGGNGYRAYVFKESIRRYAIDRKGRGRKEVIYLRVANVSCTRGVRKSTGLSYGGPYGGVP
Ga0307507_100009548F088008GGAGVLSHLIIKGLFSLNIIALNSLLIEIASFTVYNRANNLASMLNVVTVPCLFAL
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