Scaffold Ga0307507_10001038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10001038

Scaffold Ga0307507_10001038

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001038 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	61932
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F005943	Metagenome	385	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000103810	F021494	GAG	VFYIPTSASKSKSVINSSSSPNLTSRLYTLYRSAINIIFAALSLILNYPGLKLAIAIHKGLSIGRPLPYIPYNP
Ga0307507_100010384	F000247	AGG	VQTNAINVTLSYKYTPYMEVAHTNYLAGSLNIFIDKTLVPSSSILFTRLSANRKPYYSGSLYLNKSIDLTSTGL
Ga0307507_100010387	F005943	AGG	MLRNVGNGYKAYVFGESIRRCAIDRKGRGRKEVIYPRVANISCTRGVRESTGFSYGGPYGRVP
Ga0307507_100010389	F020829	GAGG	MSPNRIDSVPLISSKLITNIIFSIYGTPLTLKLYTLIIYTSPLYIWIVITAISRLTACYNYKDRLIALLIIKHTRIAAFGSYRSWNP

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