Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001084 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60422
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (66.67%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

60422

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (66.67%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F006298	Metagenome	376	Y
F021494	Metagenome	218	Y
F038017	Metagenome	166	Y
F041673	Metagenome	159	Y
F053802	Metagenome	140	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100010841	F000630	GAG	MGVKGIEAVLGKRNLSRSIVNAIGGKYLRALRRPNKGRKYNSNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000108413	F091119	AGGCGG	MLWDKGSGYRAYIFKKSIRRYAINCKGQERKEVIYLRVANVSYI
Ga0307507_1000108416	F053802	AGG	VDSRVTRNYISLVVVKRIGLLYRQKQHLYLLIIILGDPIAYGGGIINLKIGPI
Ga0307507_100010842	F021494	GAG	MFCVPTSASKSKSIINSGSSPNLTSRLYALYRSAANIIFTALNLILNCPGLKLTIAIYKGLPIGRSLPYIPCDP
Ga0307507_1000108422	F041673	N/A	MAIKSLPGLIMFFLGMPYRPTSFFAAHEALLAGLSAGVYFRMGVAIGVTGRTWLVRVLLAVAAVCKVDV
Ga0307507_1000108423	F006298	N/A	MERGLVIKNSNSLYTIYLTILSKVLVGRVVLNFYIYKKLFGLINLTLKILYAFILNQEALEVGHNNLIISNVSYTLAKLVIYLLLLIKRMPS
Ga0307507_1000108424	F002220	AGG	MHLLKSNSVFKLSFSFGFAIRFAFTNLSSLRAKNWSSSKIIVLLVYMLTIPNRVPIVIIRKQGSNIEVVIKSFSL
Ga0307507_100010846	F038017	GAG	VVRSTRYRFKLKDKDELRVNLKHTAYYTLLWIAYIDNTCNIHRAPKDKNRKYLVRIY
Ga0307507_100010849	F002220	N/A	MESLFRERMHLLKSNSIVKLSFSFSFAIRFAFTSLSSLRAKNWLSPKIIILLVYMPTILNRVPIVIIRKYGLNIEVVIKSLSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10001084

Overview

Ecosystem & Geography

Associated Families

Sequences