NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001122

Scaffold Ga0307507_10001122


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001122 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59360
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003725Metagenome471Y
F004663Metagenome428Y
F038017Metagenome166Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000112213F003725N/AMETLINLYTNLKETAKLVQERMKKYYNTKRSEGPDLKKGDRV
Ga0307507_1000112216F056201N/AMAPSRSIKLRGLNTLTRKIPYGRMPRWIIVVGVPREHLSIVYRGKELN
Ga0307507_1000112223F004663AGGAMGVLKESRLSNINKEKLPKNKSPKGDLRGAITKLLGVVSLIRGEPVLLLPSLDKPY
Ga0307507_1000112226F038017AGCAGVVRLTRYKFKLKDKDKLRVNLKHTAHYILSWIAYMDDTYNIYRALKDKNQKYLVRIY
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