NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001160

Scaffold Ga0307507_10001160


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001160 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58575
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F000630Metagenome971Y
F002793Metagenome529Y
F017572Metagenome240Y
F019418Metagenome229Y
F084969Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000116013F084969N/AMPLKVPVITPSMAAMTLGLGEDTSIRDINLQLVIVG
Ga0307507_100011602F000247N/AMHVALSYKRTPRTEVAYTNCLIGSLNISIGKTPVPSSGVLFAHLSIGGKPYYNGGLSLNGSIDPTSIGL
Ga0307507_100011605F000630GAGMEVKDIEAILGKRNLGYSIVNAIGGKHLRALRRPNKGRKCNSNTPKNRNNRTKRLALLGRYPSR
Ga0307507_100011607F019418AGGMPPKALVTTLLTAATTLGLGGDTSIADTNSQVVTQG
Ga0307507_100011608F017572N/AMLELAHGNIKPLVYKVDTYRGQEEDKWQVLKIISYKDIDNEI
Ga0307507_100011609F002793N/AMDIIPLVNNLEILGIFKDKDKEEGDSVTDSLSTIL
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