NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001298

Scaffold Ga0307507_10001298


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001298 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56011
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F003725Metagenome471Y
F032886Metagenome178Y
F037003Metagenome168Y
F038017Metagenome166Y
F084969Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000129814F003725N/AMSSIAKERMEMLINLYNYLKSTAKLVQERIKRYYNAKRSKGPDLKEGDKV
Ga0307507_1000129816F038017GAGVVKLTRYRFKLKDKDKLRVNLSHLAHYMLLWIAYMDDIYNMHRTLKDKNWKYLVRIYWAPEEK
Ga0307507_1000129817F032886N/AMESEYLLINSNKGENEANWEHLNLNNAIEAETETTIERGLVMGIITPLDTISIAL
Ga0307507_1000129818F084969AGAAGMLLKAPVTLTPIAAITLGTGTDTSIKDTNLQLVTVRQL
Ga0307507_1000129819F000630GGAGMGVKGIEADLGKGNLSYSIGNAMGGKYPRAPRGPNKGRKYNSNTLKNRNNRTKRLASLGRCPSG
Ga0307507_100012982F037003AGGAMVEGEIKKYAIKDKTIEETVEVKRNYLSVLAMHYSRTTPSTERARKDIL
Ga0307507_100012986F003725GGAGMNLYIDLIETAKLVQERIKRYYNAKRSKGPDLKEGDKV
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