NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001345

Scaffold Ga0307507_10001345


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001345 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54951
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F003725Metagenome471Y
F016500Metagenome246Y
F044237Metagenome154Y
F064278Metagenome128Y
F084969Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000134510F016500N/AMDKLIVEVIETKKGLNTFYSIRGFPVTDCLNLFRVNFNSFYTNNKPKVLYLFYSKFIFPNINL
Ga0307507_1000134512F084969N/AMPLKALVITPSMAATTLGSRGDTSIRDTDSQLVITGQLQEMVN
Ga0307507_100013453F000630GGAGMGVKGTEANLSKRNPSRSMVNAIGGKHLKALRRPNKGRKYNGNTLKNRGNRTKRLALLGRCPSR
Ga0307507_100013455F044237N/AMKIYPIQHITMLKPVHGNVKPLVYKVDTYKGQEEDK
Ga0307507_100013456F003725GGAGMNLYADLKEIAKLVQEQIKRYYNAKRSKGPDLKEGDKVWLLYKNFKS
Ga0307507_100013458F064278N/AVVVTTYPQAISKLLYTIPLANAYYNTLINPATVICFNYRKDSYFALSYLELKDISNIKEIEKEKTSNKLGKEEP
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