NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001437

Scaffold Ga0307507_10001437


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001437 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53287
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F005943Metagenome385Y
F020829Metagenome221Y
F021494Metagenome218Y
F041034Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100014371F000630GGAGMGVKGIEADLGKGNPSYSIGNAIGGKYLRALKGPNKGGKYNGNTLKDRNNRTKRLASLGRYPSR
Ga0307507_1000143712F021494N/ALYLHPSYYLLYIELSISISCVPTSAFISKSIIIFSSSPNLTSWLYILYRLAAKVIFAVLSLILNYPGLKLAVAIYRGLSIGRPLPYISCDPYIPN
Ga0307507_1000143713F020829N/AMPSVLSKLITNIIFSIYGTSLTLGLYILIIYTRPLYVWIVITIISRLAACYNYKDRLIALLVIKYIYIAAFGLYRSWNPRGSILIIYRYYNTVLI
Ga0307507_1000143717F041034N/AMIFRFLVDVSGNLILVEFSRILRLVELGGLLRYRVDISRNFRLVNSGRFFRF
Ga0307507_100014375F005943AGGMSQNAGNSYKAYVFGESTRRCAIDRKGRGRKEVIYPRVADISCTRGVRESTGFSYGGPYGWVP
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