NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001493

Scaffold Ga0307507_10001493


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001493 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52195
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Cryomyces → Cryomyces minteri(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F003457Metagenome485Y
F005943Metagenome385Y
F015182Metagenome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100014932F005943AGGMSRNGGNGYRAYVFEESTRRCAIDRKGRGRKEVIYLRVADVSYTRGIRGSMGLSYGGLCGGVP
Ga0307507_1000149320F005943AGGMSRNAGNGYKAYVFGESTRRCAIDRKDRGRKEVIYPRVADISCTRGVRESTGFSYGGPCGRVP
Ga0307507_1000149322F015182AGGVNVVIVVAGGCVTKAISDFFKEIFLVFSVVLGKDSGIFLEFNIELVK
Ga0307507_100014933F000630GAGMGVKGTEANLGKRNLSHNIVNTIGGKYLRAPRGPNKGRKYNGNTIKNRNNRTKRLALLGRCPSR
Ga0307507_100014939F003457N/AMYSGFLASYTSRVALIIYIFKVLSELKLSLVSYIVSYSVLGLVLDLVLNIKLVLNLGLGSLSILFIVEYQFF

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