NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001498

Scaffold Ga0307507_10001498


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001498 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52129
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (48.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006298Metagenome376Y
F024756Metagenome204Y
F035578Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000149822F006298N/AMERRLVIKDSNSLYAIYLTILSKVLVRRVVLNFYIYKELFSLINLTLKIFFAFILNQEALEVGYSNLLVSNVLYTLVKLIIYLLLSIKGVPN
Ga0307507_1000149825F024756GGAMPIRSIVHYTTVGESAGTNSLKHLMPRLESIMAVSKIEISNLYKTFPDLLL
Ga0307507_1000149827F035578GGAMVARVGDTVEGIININYKAIIEVLIEVYLKIINKRNATFIRS

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