NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001637

Scaffold Ga0307507_10001637


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001637 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49591
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007161Metagenome356Y
F013992Metagenome266Y
F014479Metagenome / Metatranscriptome262Y
F050242Metagenome145Y
F078050Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000163711F014479N/AVGLKGFWLLSSSVITVIKGVYVFLSVASNHRYVRVFKLLVNLNIGAYSAVLPRGLYCRNLLLSEGPSCLSATAFYKVFIEFLFRSLQDFKGG
Ga0307507_1000163713F078050N/AMVDIKERLNKEKQLEDLREKVRARRKDSDDIMVQLTH
Ga0307507_1000163714F013992N/AMAVVVVLYIAVNIYNHSRLVVAVANNSVGLIFSRVGRRDLGMCFGNKLSP
Ga0307507_1000163715F050242GGAMRLCVPTSTAKDVGHFSLGSREVVRIDFKLVLQLNLLIVECRVSSVCKQ
Ga0307507_100016377F007161AGCAGVLYYLVNRYKSDRGIVLKLGLKVPLGIPCGLTKEVEHFGFFRKEIVVVNAELSLYLNPLILKGRVYPIG
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