NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001650

Scaffold Ga0307507_10001650


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001650 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49395
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F006298Metagenome376Y
F056213Metagenome137Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000165012F056213N/AVDFGVRRSILLYRLLIMFAQALRAPGKSIPIREVFSLGLRDLTRLLTSMELFQPISFT
Ga0307507_1000165018F006298GAGLVIKNSNGLCAIYLTILSEVLVGRVVLNFHIYKELFGLINLTLKILCAFILDQKALEIGHSNLTISNISYTLLKLIVCLLLSIKGVPS
Ga0307507_1000165019F002220N/AMESSFRERIHLLKSSSIFKLSLSFSFAIRFAFTSLSFLRAKNWSSSKIIILLVYMPIIPNGVPIVIIRKQGLNIEVVIKSFSL
Ga0307507_100016504F088008GAGVLLHLIIKGLFRHNVITLNSLLVKIAFFTVYNRANNLASVLNIITIPYLFAL
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