NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001711

Scaffold Ga0307507_10001711


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001711 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48397
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016500Metagenome246Y
F041034Metagenome160Y
F064278Metagenome128Y
F064533Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100017112F064533N/AMGSPIYLLYPQIEISLGSSLKGVFKKLASFIAYYISIKAKVFAPELAKVKIKT
Ga0307507_100017115F016500N/AMDKSVVEVTEAKKGLDAFYSIRGFSVTYHLNLFRVNFNSFYTNNKPKVLSLFYSKFAFLNINL
Ga0307507_100017117F064278N/AMPLANTYYNTLINPATVTCFNYRKNGYFTISCLELKDIGNIKEIEEEETSNKLGKEEP
Ga0307507_100017118F041034AGGVDVSGNLILVEFGKILRLVEFGGILGLVELGRLFRYKVNIGRNFRLIDPSGFF
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