NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001773

Scaffold Ga0307507_10001773


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001773 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47410
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F009949Metagenome310Y
F037003Metagenome168Y
F038017Metagenome166Y
F056213Metagenome137Y
F091119Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100017731F000630GGAGMGVKGIEANLGKRNLSHNVVNAIGGKYLRAPKRPNKGRKYNGNTFKNRNNRTKRLALTWVTGF
Ga0307507_1000177312F037003AGGAMVEGKTKEYIIKDETIEEIVEVKHNYLSVLAMHYLRTTPLTERARKDIL
Ga0307507_1000177314F038017GAGVVKLTRYRFKLKDKDKLRVNLKHIAHYILLWIAYIDNIYNIYRAPKDKN
Ga0307507_1000177318F009949AGGMGGKYLRALKGPNKGRKYNSNTLKNRNNRTKRLALLGRCSSR
Ga0307507_1000177319F056213N/AVGLGIRRSILLYRLFITFTQALRAPSRSIPIREVFSLGLRDLIRLLTSAELFQPISFI
Ga0307507_1000177321F091119AGGMSRNVGNGYKAYVFGESIRRCAIDRKGQGHKEVIYPRVANIVEGYGVS
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Institute for Fundamental Biomedical Research
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