Scaffold Ga0307507_10001879

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10001879

Scaffold Ga0307507_10001879

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001879 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	45809
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F021494	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100018791	F000247	N/A	MRVTLNCKHTLYIEVAYTNYLASSLNISISKTPVPSSGVPFTHLFVDGKLYYNSSLSLNKSIDPTSTSL
Ga0307507_100018794	F000247	AGG	VYTYIIHITLNYKRTLCIEVAYTSYLISSLNIFISKTPVPSSRVLFAHLFIDKKLYYNIGLSLNKIIDLTSTSL
Ga0307507_100018799	F021494	AGG	MSCVPTSASISKSVIVSGSSPGLTGWLYALYRSAANIRFTAFSLILNYPSLKLTIAVHRGLPTGRSLPCVPYNPYVPI

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