NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001910

Scaffold Ga0307507_10001910


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001910 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45322
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024756Metagenome204Y
F041673Metagenome159Y
F050242Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100019101F041673N/AMPYRPIFFLTAHKALLAGLSAGVCFRTGVAIGVTGRTWLVRVLLAVVAVRKVDV
Ga0307507_1000191012F024756GGAMPIYSVAHYIMAGESTSTNSLKRLILCLESIMAAGKMEISNLYKTFLDLLL
Ga0307507_100019105F050242GGAMRLCVSTSTAEDIGHFSLGSREVVHINFKLVLQLKLLIIKYRVSSICKQQGVHNLYKPRR
Ga0307507_100019107F024756GGAMPIHSVVYCTTVGESAGTNSLKRLMPRLESVIAAGEMEISDLYKTFLDLLL
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