NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001922

Scaffold Ga0307507_10001922


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001922 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45154
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002220Metagenome581Y
F009949Metagenome310Y
F032886Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100019221F009949GGAMGNAIGGKYLRAPRGPNKGGKYNSNTLKNRNNRTKRLALLGRCPSR
Ga0307507_100019222F000630GGAGMGIKGIEADLGKRNPSRSIVNTMGGKHLRALRRPNKGRKYNGNTFKNRNNRTKRLALLGRCPSR
Ga0307507_100019228F032886N/AMELEYLLINSNKDKKGTNWGYLNLNNAIEVETETTTKRGLVMGIIILLDTESIAL
Ga0307507_100019229F002220AGGMHPLKSNSIIKLSFSFGFAIRFAFTSLSSLRAKNWSSSKIIVLLVYMPTIPNGVPVVVIKKHRLNIEVVIKSFSLWCLL
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