NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001959

Scaffold Ga0307507_10001959


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001959 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44661
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002220Metagenome581Y
F003725Metagenome471Y
F007022Metagenome359Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000195910F002220AGGMHLLKSNGVVKLSFSFSFAIRFAFTSLSSLRAKNWLSPKIIILLVYMLMIPNRVPIVVIRKQGLNIEVVIKSFFL
Ga0307507_1000195911F003725N/AMENLIYLYNYLKEIVKLVQTRIKRYYNAKRFKGLDLKKGDKVWLLYKNFKS
Ga0307507_100019596F007022N/AMIICFNYGKDSYFTLFCLELKDIGNIKEIKKEEIFNKLGKEEP
Ga0307507_100019599F000630GGAGMGVKSTEVGLGKGNLSHSMGNAIGGKYLRALKGPNKGRKYNSNTFKDRNNRIKRLALLGGCPSR

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