NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001982

Scaffold Ga0307507_10001982


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001982 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44397
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F016500Metagenome246Y
F024756Metagenome204Y
F027375Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000198210F016500N/ALYKRLSYNPIVIDKLIVEVIEAKKGLDTSYSIRGLLVIYYLNLLRVNFNSFYTNNKPKVLYLFYSKFIFLNINL
Ga0307507_1000198211F000247N/AMHITLNYKHTLYTEVAYTNYLTSSLNISISKTPVPSSSVPFTYPFINRKLYYNSGLSLNKSIDLTSTSL
Ga0307507_1000198213F027375AGGVLILCYIFNKRQNKDQNALLNTVPLLDIIPLSMLNRSYRSKNRSASSAAIIVIKIVKYPKNFIYLLTITRIALATSPVLILVGGKPIIKSIVNSNIGPYEIKSTNNLLYR
Ga0307507_1000198214F024756GGAMPIRSIAYYIIVGESTGTNSLKRLMPRLESVIVAGKMEISNLYKTFSDLLL
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