Scaffold Ga0307507_10002083

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10002083

Scaffold Ga0307507_10002083

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10002083 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	43244
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Chaetothyriomycetidae → Chaetothyriales → unclassified Chaetothyriales → Chaetothyriales sp. CBS 134916	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015182	Metagenome	256	Y
F037003	Metagenome	168	Y
F078050	Metagenome / Metatranscriptome	116	Y
F088008	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100020831	F088008	N/A	MLSHLIIKGSFRRNVIALNSLLIKIASFTIYNRANNLASVLNVITIPYLFAL
Ga0307507_100020832	F037003	GAG	MAQGAEQSTIEEIRKEXTVEGEIKEYAIKDKTTEETVEVKRNYLSILAMHYLRTTPLTERAYKDTL
Ga0307507_100020837	F015182	N/A	MAGGCITKVISTFFKEIFLVFSIVLGKGFSIFLEFNIELIK
Ga0307507_100020839	F078050	N/A	MVDIKEQLDKEKQLEDLRNSIRARRKDLDKITVQLTY

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