Scaffold Ga0307507_10002195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10002195

Scaffold Ga0307507_10002195

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10002195 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	41764
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002793	Metagenome	529	Y
F005943	Metagenome	385	Y
F007022	Metagenome	359	Y
F024756	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000219512	F002793	N/A	MDIIPLVDNLEILKIFKDKDKEEGDGVTDSLSIIL
Ga0307507_100021954	F024756	N/A	VAHYITVGESAGINGLKRLVLCLGSIIAAGEMEISDLYKTFLDLLL
Ga0307507_100021957	F007022	N/A	MVIYFNCGKDGYFTTSYPELKDIGDIKEIEKKETSNKLGKEKP
Ga0307507_100021958	F005943	N/A	MSRNVGNGYKAYVFWESTSHCAIDRKGRGRKEVIYPRVADISCTRGVRESTGFSYGGPYGRVP

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