NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002249

Scaffold Ga0307507_10002249


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002249 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41217
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F005943Metagenome385Y
F015182Metagenome256Y
F016255Metagenome248Y
F032490Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100022492F000630GAGMGVKGIEADLGKGNPSHSIGNAIGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLGGCPSR
Ga0307507_100022494F015182GGCGGVTKAISDFFKKIFLVFSIILGENSSVFLEFNIELIK
Ga0307507_100022497F032490N/AMSNLKNNPIPILNPQRQLILGGFNLLALALTPKGKPSGLKDYNNLNKVDINNILSFINYTTTDK
Ga0307507_100022498F005943AGGMSRDRGNGYRAYVFEESTRRYAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYRGPYGGVP
Ga0307507_100022499F016255N/AMPSFIPLNTSNSYLVKELNIRDINNKIIKDAFKNALSFINSLGFLPKE
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