NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002344

Scaffold Ga0307507_10002344


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002344 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40176
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000746Metagenome908Y
F006298Metagenome376Y
F053802Metagenome140Y
F084969Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000234411F053802N/AMDSGAIRNRILLAVVKRIGLPHRQKKHLYLLITILENLIAYRGGIINLKIGLI
Ga0307507_1000234412F084969N/AMLLKALVITLSIVAITLGTSGDTSIRDTNLQLVIAGQL
Ga0307507_100023443F000746N/AMIITGLIKYIVAVVGNTEEGIINVDYKATVEVLVEVHFKVITRRSATFVRSQSAS
Ga0307507_100023444F006298N/AMEHRLVIKNSDSLYTIYLTILSKVLVRRVVLNFHIHKELFNLINLTLKVFYAFILNQEALEVGRSDLTISNISCTLTELIICLFSLIKGVSS
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