NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002351

Scaffold Ga0307507_10002351


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002351 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40090
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (61.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005943Metagenome385Y
F016255Metagenome248Y
F062472Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000235129F005943GAGVVKRRNVMSRDGGSGYKAYVFEESTRRCAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYGGPCGGVP
Ga0307507_1000235130F062472AGGVGKQGSGDQSFLKLIKGLPIYGIKIGGLVLLGKVAKGPSNSTIVLNKALVEVIKT
Ga0307507_100023514F016255N/AMPSSIPLNTSNSYLVEKLNTRDINDEIIKDAFKDALSFTNSLESLPRE
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